diff --git a/Source/Core/Common/Config/Config.cpp b/Source/Core/Common/Config/Config.cpp
index 071d009b51..c75b6ee5e9 100644
--- a/Source/Core/Common/Config/Config.cpp
+++ b/Source/Core/Common/Config/Config.cpp
@@ -71,11 +71,14 @@ void AddConfigChangedCallback(ConfigChangedCallback func)
 
 void OnConfigChanged()
 {
+  // Increment the config version to invalidate caches.
+  // To ensure that getters do not return stale data, this should always be done
+  // even when callbacks are suppressed.
+  s_config_version.fetch_add(1, std::memory_order_relaxed);
+
   if (s_callback_guards)
     return;
 
-  s_config_version.fetch_add(1, std::memory_order_relaxed);
-
   for (const auto& callback : s_callbacks)
     callback();
 }